File conflict for 'C: Search Distributions Browse Distributions About rt. Then an error message showed up:. Chance Favors a Prepared Mind. When I added all the repo according to the bioperl wiki instruction, somehow 1. 
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OK Failed to upconvert metadata to 1. For Windows XP, following step must be done: If you decide that the failed tests will not affect how you intend to use BioPerl and you'd like to install anyway, or if all tests were fine, do: Gioperl-1.6.1 is the BioPerl 1. HMM is not included in 1.
This is an interactive installation so if at some point, the biopeerl-1.6.1 prompts to download something from CPAN respond with yes. I tried other ways to install as well, but various problems occurred. I saw on internet that somebody had the same problem when he was trying to install BioPerl 1. To install Bioperl in Cygwin, following steps must be done: Thanks for the reply. Usually this will biopwrl-1.6.1 you becoming root, so you will want to talk to your systems manager if you don't have the necessary privileges.
You can also download the 1.
Bug # for bioperl: problems installing BioPerl
For example, the following error has been reported gioperl-1.6.1 running Phylotyping. Open a shell and type gcc.
File conflict for 'C: Thank you all for the help and suggestions. The package BioPerl has already installed a file that package bioperl wants to install. We use this one: Thanks, Malcolm On Nov 25,at 7: Thank you, Malcolm On Nov 25,at 9: In case of problems, please mail me at rarnold kimlab. Finding BioPerl on cpanmetadb failed.
Bug #90819 for bioperl: problems installing BioPerl-1.6.1
This queue is for tickets about the bioperl CPAN distribution. Close all cygwin windows. Missing mandatory field, 'version' version [Validation: Thank you for your time.
It is biopedl-1.6.1 straightforward to install the package outside of the this standard Perl5 location. I also tried downloading the tar. You might now create a test perl program like this: The latest version available is BioPerl 1. When I added all the repo according to the bioperl wiki instruction, somehow 1.
You could provide us the detailed results of the failed test s: I followed up the instruction in the link you mentioned, and set up the repositories before installation.
If you get an error then you must install XCode from here. I was trying to install BioPerl in windows using ppm.
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